# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "phangorn" in publications use:'
type: software
license: GPL-2.0-or-later
title: 'phangorn: Phylogenetic Reconstruction and Analysis'
version: 3.0.0.0
doi: 10.1093/bioinformatics/btq706
identifiers:
- type: doi
  value: 10.32614/CRAN.package.phangorn
abstract: Allows for estimation of phylogenetic trees and networks using Maximum Likelihood,
  Maximum Parsimony, distance methods and Hadamard conjugation (Schliep 2011). Offers
  methods for tree comparison, model selection and visualization of phylogenetic networks
  as described in Schliep et al. (2017).
authors:
- family-names: Schliep
  given-names: Klaus
  email: klaus.schliep@gmail.com
  orcid: https://orcid.org/0000-0003-2941-0161
- family-names: Paradis
  given-names: Emmanuel
  orcid: https://orcid.org/0000-0003-3092-2199
- family-names: Oliveira Martins
  given-names: Leonardo
  name-particle: de
  orcid: https://orcid.org/0000-0001-5247-1320
- family-names: Potts
  given-names: Alastair
- family-names: Bardel-Kahr
  given-names: Iris
  orcid: https://orcid.org/0000-0002-8950-834X
preferred-citation:
  type: article
  title: 'phangorn: phylogenetic analysis in R'
  authors:
  - family-names: Schliep
    given-names: Klaus
    email: klaus.schliep@gmail.com
    orcid: https://orcid.org/0000-0003-2941-0161
  journal: Bioinformatics
  year: '2011'
  volume: '27'
  issue: '4'
  doi: 10.1093/bioinformatics/btq706
  start: '592'
  end: '593'
repository: https://klausvigo.r-universe.dev
repository-code: https://github.com/KlausVigo/phangorn
commit: 0ddb6304211a1b711d7f9baef1946ee862f33c55
url: https://klausvigo.github.io/phangorn/
contact:
- family-names: Schliep
  given-names: Klaus
  email: klaus.schliep@gmail.com
  orcid: https://orcid.org/0000-0003-2941-0161
references:
- type: article
  title: Intertwining phylogenetic trees and networks
  authors:
  - family-names: Schliep
    given-names: Klaus
  - family-names: Potts
    given-names: Alastair J.
  - family-names: Morrison
    given-names: David A.
  - family-names: Grimm
    given-names: Guido W.
  journal: Methods in Ecology and Evolution
  volume: '8'
  issue: '10'
  keywords:
  - exploratory data analysis
  - networks
  - phangorn
  - R
  - trees
  year: '2017'
  start: '1212'
  end: '1220'